Index

A

add() (metapypulation.subpopulation.SetOfIndividuals method)

add_individual() (metapypulation.subpopulation.Subpopulation method) axelrod_interaction() (metapypulation.individual.Individual method)

B

burn_in (metapypulation.simulation.Simulation attribute)

C

carrying_capacities (metapypulation.metapopulation.Metapopulation attribute) (metapypulation.simulation.Simulation attribute)

count_traits_sets() (metapypulation.subpopulation.Subpopulation method) create_interaction() (metapypulation.subpopulation.Subpopulation method) create_migration_table() (metapypulation.simulation.Simulation method)

D

discard() (metapypulation.subpopulation.SetOfIndividuals method)

E

empty_lists() (metapypulation.simulation.Simulation method)

empty_set() (metapypulation.subpopulation.SetOfIndividuals method)

F

features (metapypulation.individual.Individual attribute)

G

generations (metapypulation.simulation.Simulation attribute) get_current_number_of_migrants() (metapypulation.subpopulation.Subpopulation method)

get_metapopulation_size() (metapypulation.metapopulation.Metapopulation method) get_population_size() (metapypulation.subpopulation.Subpopulation method)

I

id (metapypulation.individual.Individual attribute) (metapypulation.subpopulation.Subpopulation attribute) incoming_migrants (metapypulation.subpopulation.Subpopulation attribute) incorporate_migrants_in_population() (metapypulation.subpopulation.Subpopulation method)

Individual (class in metapypulation.individual) IndividualsIterator (class in metapypulation.subpopulation) interact() (metapypulation.individual.Individual method) interaction_type (metapypulation.simulation.Simulation attribute) is_trait_in_subpopulation() (metapypulation.subpopulation.Subpopulation method)

L

list_migrants() (metapypulation.subpopulation.Subpopulation method)

M

make_interact() (metapypulation.metapopulation.Metapopulation method) measure_timing (metapypulation.simulation.Simulation attribute) metapop_set_counts (metapypulation.simulation.Simulation attribute) metapop_shannon (metapypulation.simulation.Simulation attribute) Metapopulation (class in metapypulation.metapopulation) metapopulation_shannon_diversity() (metapypulation.metapopulation.Metapopulation method) metapopulation_test_sets() (metapypulation.metapopulation.Metapopulation method) metapypulation module metapypulation.individual module metapypulation.metapopulation module

metapypulation.simulation module metapypulation.subpopulation module migrate() (metapypulation.metapopulation.Metapopulation method) migration_matrix (metapypulation.metapopulation.Metapopulation attribute) (metapypulation.simulation.Simulation attribute) module metapypulation metapypulation.individual metapypulation.metapopulation metapypulation.simulation metapypulation.subpopulation

N

neutral_interaction() (metapypulation.individual.Individual method) number_of_changes (metapypulation.individual.Individual attribute) number_of_features (metapypulation.individual.Individual attribute) (metapypulation.metapopulation.Metapopulation attribute)

number_of_subpopulations (metapypulation.metapopulation.Metapopulation attribute) (metapypulation.simulation.Simulation attribute) number_of_traits (metapypulation.individual.Individual attribute) (metapypulation.metapopulation.Metapopulation attribute)

O

original_deme_id (metapypulation.individual.Individual attribute)

outgoing_migrants (metapypulation.subpopulation.Subpopulation attribute) output_path (metapypulation.simulation.Simulation attribute)

P

populate() (metapypulation.metapopulation.Metapopulation method)

population (metapypulation.subpopulation.Subpopulation attribute)

R

receive_migrants() (metapypulation.subpopulation.Subpopulation method) replicates (metapypulation.simulation.Simulation attribute)

return_traits_sets() (metapypulation.subpopulation.Subpopulation method) run_simulation() (metapypulation.simulation.Simulation method) run_single_replicate() (metapypulation.simulation.Simulation method)

S

sample_and_remove() (metapypulation.subpopulation.SetOfIndividuals method) save_output() (metapypulation.simulation.Simulation method) SetOfIndividuals (class in metapypulation.subpopulation) SetOfSubpopulations (class in metapypulation.metapopulation) shannon_diversity() (metapypulation.subpopulation.Subpopulation method) shannon_diversity_per_subpopulation() (metapypulation.metapopulation.Metapopulation method)

shuffle() (metapypulation.subpopulation.SetOfIndividuals method) Simulation (class in metapypulation.simulation) subpop_set_counts (metapypulation.simulation.Simulation attribute) subpop_shannon (metapypulation.simulation.Simulation attribute) Subpopulation (class in metapypulation.subpopulation) SubpopulationIterator (class in metapypulation.metapopulation) subpopulations (metapypulation.metapopulation.Metapopulation attribute)

T

traits_sets_per_subpopulation() (metapypulation.metapopulation.Metapopulation method)

type_of_interaction (metapypulation.metapopulation.Metapopulation attribute) (metapypulation.subpopulation.Subpopulation attribute)

V

verbose (metapypulation.simulation.Simulation attribute)

verbose_timing (metapypulation.simulation.Simulation attribute)